L596_027945 protein (Steinernema carpocapsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

L596_027945

Uncharacterized protein. (357 aa)

Predicted Functional Partners:

L596_007150

0.916

L596_005467

0.916

L596_023667

0.891

L596_003627

0.891

L596_005562

0.885

L596_019896

0.880

L596_030614

0.879

L596_009539

0.869

L596_018356

0.853

L596_007400

0.852

Your Current Organism:

Steinernema carpocapsae

NCBI taxonomy Id: 34508
Other names: Neoaplectana carpocapsae, S. carpocapsae, Steinernema sp. LE-2017

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
L596_003627	L596_005467	A0A4U8UT80	A0A4U8V0P3	Uncharacterized protein.	TRUD domain-containing protein.	0.981
L596_003627	L596_005562	A0A4U8UT80	A0A4U8UZD7	Uncharacterized protein.	Uncharacterized protein.	0.998
L596_003627	L596_007150	A0A4U8UT80	A0A4U5P8C5	Uncharacterized protein.	TrmE-type G domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	0.980
L596_003627	L596_007400	A0A4U8UT80	A0A4U5P957	Uncharacterized protein.	KOW domain-containing protein.	0.999
L596_003627	L596_009539	A0A4U8UT80	A0A4U5PFM8	Uncharacterized protein.	Uncharacterized protein.	0.999
L596_003627	L596_018356	A0A4U8UT80	A0A4U5N4E3	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	0.999
L596_003627	L596_019896	A0A4U8UT80	A0A4U5MRX3	Uncharacterized protein.	Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	0.995
L596_003627	L596_023667	A0A4U8UT80	A0A4U5MED9	Uncharacterized protein.	Uncharacterized protein.	0.999
L596_003627	L596_027945	A0A4U8UT80	A0A4U5LWZ8	Uncharacterized protein.	Uncharacterized protein.	0.891
L596_003627	L596_030614	A0A4U8UT80	A0A4U5LPY1	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	0.999
L596_005467	L596_003627	A0A4U8V0P3	A0A4U8UT80	TRUD domain-containing protein.	Uncharacterized protein.	0.981
L596_005467	L596_005562	A0A4U8V0P3	A0A4U8UZD7	TRUD domain-containing protein.	Uncharacterized protein.	0.980
L596_005467	L596_007150	A0A4U8V0P3	A0A4U5P8C5	TRUD domain-containing protein.	TrmE-type G domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	0.980
L596_005467	L596_007400	A0A4U8V0P3	A0A4U5P957	TRUD domain-containing protein.	KOW domain-containing protein.	0.980
L596_005467	L596_009539	A0A4U8V0P3	A0A4U5PFM8	TRUD domain-containing protein.	Uncharacterized protein.	0.980
L596_005467	L596_018356	A0A4U8V0P3	A0A4U5N4E3	TRUD domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	0.980
L596_005467	L596_019896	A0A4U8V0P3	A0A4U5MRX3	TRUD domain-containing protein.	Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	0.982
L596_005467	L596_023667	A0A4U8V0P3	A0A4U5MED9	TRUD domain-containing protein.	Uncharacterized protein.	0.982
L596_005467	L596_027945	A0A4U8V0P3	A0A4U5LWZ8	TRUD domain-containing protein.	Uncharacterized protein.	0.916
L596_005467	L596_030614	A0A4U8V0P3	A0A4U5LPY1	TRUD domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	0.973