STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L596_025034ChSh domain-containing protein. (83 aa)    
Predicted Functional Partners:
L596_005253
Uncharacterized protein.
    
 0.675
L596_020233
RanBP2-type domain-containing protein.
    
 0.613
L596_026404
RING-type domain-containing protein.
    
 0.601
L596_009136
RING-type domain-containing protein.
    
 0.601
L596_020234
E2F_TDP domain-containing protein.
   
 0.587
L596_012309
E2F_TDP domain-containing protein.
   
 0.587
L596_007236
Uncharacterized protein.
   
 0.514
L596_006923
WD_REPEATS_REGION domain-containing protein.
   
 0.502
L596_013515
Uncharacterized protein.
    
 0.487
L596_007801
Uncharacterized protein.
    
 0.487
Your Current Organism:
Steinernema carpocapsae
NCBI taxonomy Id: 34508
Other names: Neoaplectana carpocapsae, S. carpocapsae, Steinernema sp. LE-2017
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.