STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L596_005200Uncharacterized protein. (179 aa)    
Predicted Functional Partners:
L596_011428
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
  0.587
L596_007166
Uncharacterized protein.
    
 0.547
L596_024098
Uncharacterized protein.
    
 0.522
L596_027030
RIO domain-containing protein.
    
 0.519
L596_018415
Uncharacterized protein.
    
 0.508
L596_027074
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
    
 0.493
L596_002858
PAS domain-containing protein.
    
 0.480
L596_021204
WD_REPEATS_REGION domain-containing protein.
   
 0.453
L596_028308
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.
    
  0.442
L596_014452
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.
    
  0.442
Your Current Organism:
Steinernema carpocapsae
NCBI taxonomy Id: 34508
Other names: Neoaplectana carpocapsae, S. carpocapsae, Steinernema sp. LE-2017
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