Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KJV36822.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)    
Predicted Functional Partners:
KJV36823.1
RNA polymerase sigma70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
       0.578
KJV36824.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.578
KJV36825.1
Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.578
dusB
tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily.
       0.533
KJV36843.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.511
KJV36821.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.427
KJV36842.1
Cytochrome C oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.404
Your Current Organism:
Luteibacter yeojuensis
NCBI taxonomy Id: 345309
Other names: DSM 17673, Dyella sp. R2A16-10, Dyella yeojuensis, Dyella yeojuensis Kim et al. 2006, KACC 11405, L. yeojuensis, Luteibacter yeojuensis (Kim et al. 2006) Kampfer et al. 2009, strain R2A16-10
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