Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KJV35251.1TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (1066 aa)    
Predicted Functional Partners:
KJV35254.1
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.816
KJV35255.1
Sulfotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.797
KJV36544.1
Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.769
KJV35252.1
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.768
KJV35253.1
Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.768
cysC
Adenylyltransferase; Catalyzes the synthesis of activated sulfate.
       0.725
KJV33868.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.702
KJV29713.1
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.637
KJV27807.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.629
KJV31345.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.617
Your Current Organism:
Luteibacter yeojuensis
NCBI taxonomy Id: 345309
Other names: DSM 17673, Dyella sp. R2A16-10, Dyella yeojuensis, Dyella yeojuensis Kim et al. 2006, KACC 11405, L. yeojuensis, Luteibacter yeojuensis (Kim et al. 2006) Kampfer et al. 2009, strain R2A16-10
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