AJE02562.1 protein (Geobacter pickeringii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AJE02562.1

Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)

Predicted Functional Partners:

AJE02561.1

0.998

AJE04793.1

0.998

AJE04650.1

0.984

AJE04125.1

0.976

AJE02114.1

0.943

AJE02115.1

0.927

AJE04964.1

0.927

glnQ

0.923

AJE02560.1

0.773

AJE02559.1

0.661

Your Current Organism:

Geobacter pickeringii

NCBI taxonomy Id: 345632
Other names: DSM 17153, G. pickeringii, Geobacter pickeringii Shelobolina et al. 2007, JCM 13000, strain G13

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJE02114.1	AJE02115.1	GPICK_00825	GPICK_00830	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
AJE02114.1	AJE02561.1	GPICK_00825	GPICK_03475	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.838
AJE02114.1	AJE02562.1	GPICK_00825	GPICK_03480	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.943
AJE02114.1	AJE04964.1	GPICK_00825	GPICK_15860	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.839
AJE02114.1	glnQ	GPICK_00825	GPICK_12860	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Similar to ATP-binding component of ABC transporters; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.806
AJE02115.1	AJE02114.1	GPICK_00830	GPICK_00825	Amino acid ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
AJE02115.1	AJE02562.1	GPICK_00830	GPICK_03480	Amino acid ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.927
AJE02115.1	AJE04125.1	GPICK_00830	GPICK_12850	Amino acid ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.834
AJE02115.1	AJE04650.1	GPICK_00830	GPICK_15870	Amino acid ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.	0.840
AJE02115.1	AJE04793.1	GPICK_00830	GPICK_03485	Amino acid ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.835
AJE02559.1	AJE02560.1	GPICK_03465	GPICK_03470	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.661
AJE02559.1	AJE02561.1	GPICK_03465	GPICK_03475	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.664
AJE02559.1	AJE02562.1	GPICK_03465	GPICK_03480	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.661
AJE02559.1	AJE04793.1	GPICK_03465	GPICK_03485	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.485
AJE02560.1	AJE02559.1	GPICK_03470	GPICK_03465	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.661
AJE02560.1	AJE02561.1	GPICK_03470	GPICK_03475	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
AJE02560.1	AJE02562.1	GPICK_03470	GPICK_03480	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
AJE02560.1	AJE04793.1	GPICK_03470	GPICK_03485	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.559
AJE02561.1	AJE02114.1	GPICK_03475	GPICK_00825	Arginine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.838
AJE02561.1	AJE02559.1	GPICK_03475	GPICK_03465	Arginine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.664

page 1 of 4

Server load: low (20%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About