Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AJE02659.1rRNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (191 aa)    
Predicted Functional Partners:
AJE02658.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
AJE03183.1
Polyprenyl synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FPP/GGPP synthase family.
 
 
 0.512
AJE02660.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.503
birA
biotin--acetyl-CoA carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.477
AJE04885.1
Phosphoenolpyruvate-protein phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.469
AJE02657.1
Squalene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.436
Your Current Organism:
Geobacter pickeringii
NCBI taxonomy Id: 345632
Other names: DSM 17153, G. pickeringii, Geobacter pickeringii Shelobolina et al. 2007, JCM 13000, strain G13
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