Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJE02723.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (484 aa)    
Predicted Functional Partners:
AJE02914.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.744
AJE02198.1
Exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.732
AJE03815.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.698
AJE04486.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.696
AJE04210.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.665
ftsL
Cell division protein FtsL; Essential cell division protein; Belongs to the FtsL family.
  
     0.627
AJE04484.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.618
AJE04648.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.606
AJE04035.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.594
AJE02004.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.589
Your Current Organism:
Geobacter pickeringii
NCBI taxonomy Id: 345632
Other names: DSM 17153, G. pickeringii, Geobacter pickeringii Shelobolina et al. 2007, JCM 13000, strain G13
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