Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJE03639.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)    
Predicted Functional Partners:
AJE03640.1
Histone deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.817
AJE03638.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.803
AJE04887.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.485
AJE02923.1
Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.444
AJE03641.1
Ammonium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.433
Your Current Organism:
Geobacter pickeringii
NCBI taxonomy Id: 345632
Other names: DSM 17153, G. pickeringii, Geobacter pickeringii Shelobolina et al. 2007, JCM 13000, strain G13
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