STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001189965_04642Unannotated protein. (378 aa)    
Predicted Functional Partners:
GCA_001189965_00378
Unannotated protein.
   
 
 0.801
GCA_001189965_00379
Unannotated protein.
   
 
 0.782
GCA_001189965_02268
Unannotated protein.
    
 0.751
GCA_001189965_00423
Unannotated protein.
    
  0.709
GCA_001189965_04641
Unannotated protein.
     
 0.609
GCA_001189965_01756
Unannotated protein.
  
 
  0.544
GCA_001189965_03570
Unannotated protein.
   
 0.503
GCA_001189965_01424
Unannotated protein.
    
 0.496
GCA_001189965_03029
Unannotated protein.
    
 0.496
GCA_001189965_00389
Unannotated protein.
    
 0.493
Your Current Organism:
Herbaspirillum rhizosphaerae
NCBI taxonomy Id: 346179
Other names: CIP 108917, H. rhizosphaerae, Herbaspirillum rhizosphaerae Jung et al. 2007, KCTC 12558, strain UMS-37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.