STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAY42_01040Ion_trans_2 domain-containing protein. (210 aa)    
Predicted Functional Partners:
AAY42_01035
Uncharacterized protein.
 
     0.828
AAY42_01060
Uncharacterized protein.
 
     0.788
AAY42_01050
Multidrug transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
     0.737
AAY42_01045
Uncharacterized protein.
   
   0.727
AAY42_01055
ABC transporter permease; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.715
AAY42_03775
Uncharacterized protein.
  
  
  0.611
AAY42_05515
Uncharacterized protein.
  
     0.556
AAY42_04195
DNA topoisomerase IV subunit B.
    
 
 0.540
gyrB
DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
    
 
 0.540
AAY42_13325
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
  0.525
Your Current Organism:
Flagellimonas eckloniae
NCBI taxonomy Id: 346185
Other names: F. eckloniae, Flagellimonas eckloniae Bae et al. 2007, Flagellimonas sp. DK169, Flavobacteriaceae bacterium DOKDO 007, JCM 13831, KCCM 42307, strain DOKDO 007
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.