STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAY42_02005ABC transporter ATP-binding protein. (259 aa)    
Predicted Functional Partners:
AAY42_02015
ABC transporter substrate-binding protein.
 
 0.996
AAY42_02010
Iron ABC transporter; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
  0.967
AAY42_02025
ABC transporter substrate-binding protein.
  
 0.958
AAY42_02000
DNA polymerase V.
       0.561
AAY42_01990
Thioesterase.
       0.556
AAY42_01995
6-phosphogluconate dehydrogenase.
       0.556
AAY42_00405
Corrinoid adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
  
 
  0.441
rpsE
30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
     0.427
rsmA
Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
    0.423
AAY42_17410
ABC transporter ATP-binding protein.
  
  
 
0.407
Your Current Organism:
Flagellimonas eckloniae
NCBI taxonomy Id: 346185
Other names: F. eckloniae, Flagellimonas eckloniae Bae et al. 2007, Flagellimonas sp. DK169, Flavobacteriaceae bacterium DOKDO 007, JCM 13831, KCCM 42307, strain DOKDO 007
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