STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAY42_04815Peptidase M20. (475 aa)    
Predicted Functional Partners:
AAY42_15700
Glutamate synthase.
    
  0.884
AAY42_04805
Oxidoreductase.
 
     0.577
AAY42_07895
Peptidase M20.
 
  
  0.544
AAY42_00275
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Belongs to the transferase hexapeptide repeat family.
  
  
 0.519
AAY42_04800
Cell division inhibitor.
       0.516
AAY42_04810
Deoxyribodipyrimidine photolyase; Belongs to the DNA photolyase family.
       0.516
AAY42_03275
Gamma-glutamyltranspeptidase.
 
  
  0.493
AAY42_07095
Acetylornithine deacetylase.
 
  
  0.484
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
    
 0.468
AAY42_04615
TPR_REGION domain-containing protein.
  
     0.420
Your Current Organism:
Flagellimonas eckloniae
NCBI taxonomy Id: 346185
Other names: F. eckloniae, Flagellimonas eckloniae Bae et al. 2007, Flagellimonas sp. DK169, Flavobacteriaceae bacterium DOKDO 007, JCM 13831, KCCM 42307, strain DOKDO 007
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.