Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AAY42_04900 | AAY42_04910 | AAY42_04900 | AAY42_04910 | Acetyl-CoA synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA. | Phosphate starvation protein PhoH. | 0.541 |
AAY42_04900 | purC | AAY42_04900 | AAY42_04905 | Acetyl-CoA synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA. | Phosphoribosylaminoimidazole-succinocarboxamide synthase; Belongs to the SAICAR synthetase family. | 0.551 |
AAY42_04910 | AAY42_04900 | AAY42_04910 | AAY42_04900 | Phosphate starvation protein PhoH. | Acetyl-CoA synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA. | 0.541 |
AAY42_04910 | AAY42_04915 | AAY42_04910 | AAY42_04915 | Phosphate starvation protein PhoH. | Uncharacterized protein. | 0.647 |
AAY42_04910 | AAY42_04920 | AAY42_04910 | AAY42_04920 | Phosphate starvation protein PhoH. | Antibiotic biosynthesis monooxygenase. | 0.583 |
AAY42_04910 | AAY42_04925 | AAY42_04910 | AAY42_04925 | Phosphate starvation protein PhoH. | ABC transporter permease. | 0.588 |
AAY42_04910 | AAY42_04930 | AAY42_04910 | AAY42_04930 | Phosphate starvation protein PhoH. | Gliding motility protein GldG. | 0.602 |
AAY42_04910 | purC | AAY42_04910 | AAY42_04905 | Phosphate starvation protein PhoH. | Phosphoribosylaminoimidazole-succinocarboxamide synthase; Belongs to the SAICAR synthetase family. | 0.827 |
AAY42_04910 | recO | AAY42_04910 | AAY42_13655 | Phosphate starvation protein PhoH. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.750 |
AAY42_04910 | rsfS | AAY42_04910 | AAY42_07190 | Phosphate starvation protein PhoH. | Ribosomal silencing factor RsfS; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 0.650 |
AAY42_04910 | tadA | AAY42_04910 | AAY42_11580 | Phosphate starvation protein PhoH. | tRNA-specific adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. | 0.599 |
AAY42_04910 | ybeY | AAY42_04910 | AAY42_12625 | Phosphate starvation protein PhoH. | Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.826 |
AAY42_04915 | AAY42_04910 | AAY42_04915 | AAY42_04910 | Uncharacterized protein. | Phosphate starvation protein PhoH. | 0.647 |
AAY42_04915 | AAY42_04920 | AAY42_04915 | AAY42_04920 | Uncharacterized protein. | Antibiotic biosynthesis monooxygenase. | 0.828 |
AAY42_04915 | AAY42_04925 | AAY42_04915 | AAY42_04925 | Uncharacterized protein. | ABC transporter permease. | 0.849 |
AAY42_04915 | AAY42_04930 | AAY42_04915 | AAY42_04930 | Uncharacterized protein. | Gliding motility protein GldG. | 0.828 |
AAY42_04915 | purC | AAY42_04915 | AAY42_04905 | Uncharacterized protein. | Phosphoribosylaminoimidazole-succinocarboxamide synthase; Belongs to the SAICAR synthetase family. | 0.580 |
AAY42_04920 | AAY42_04910 | AAY42_04920 | AAY42_04910 | Antibiotic biosynthesis monooxygenase. | Phosphate starvation protein PhoH. | 0.583 |
AAY42_04920 | AAY42_04915 | AAY42_04920 | AAY42_04915 | Antibiotic biosynthesis monooxygenase. | Uncharacterized protein. | 0.828 |
AAY42_04920 | AAY42_04925 | AAY42_04920 | AAY42_04925 | Antibiotic biosynthesis monooxygenase. | ABC transporter permease. | 0.805 |
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