Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AAY42_01515 | AAY42_04940 | AAY42_01515 | AAY42_04940 | Uncharacterized protein. | tRNA modification GTPase. | 0.414 |
AAY42_03220 | AAY42_04940 | AAY42_03220 | AAY42_04940 | Metalloprotease. | tRNA modification GTPase. | 0.404 |
AAY42_03920 | AAY42_04175 | AAY42_03920 | AAY42_04175 | DEAD/DEAH box helicase. | DNA topoisomerase IV subunit A. | 0.403 |
AAY42_03920 | AAY42_04940 | AAY42_03920 | AAY42_04940 | DEAD/DEAH box helicase. | tRNA modification GTPase. | 0.475 |
AAY42_03920 | AAY42_15875 | AAY42_03920 | AAY42_15875 | DEAD/DEAH box helicase. | Glycine dehydrogenase. | 0.665 |
AAY42_04175 | AAY42_03920 | AAY42_04175 | AAY42_03920 | DNA topoisomerase IV subunit A. | DEAD/DEAH box helicase. | 0.403 |
AAY42_04175 | AAY42_04940 | AAY42_04175 | AAY42_04940 | DNA topoisomerase IV subunit A. | tRNA modification GTPase. | 0.401 |
AAY42_04940 | AAY42_01515 | AAY42_04940 | AAY42_01515 | tRNA modification GTPase. | Uncharacterized protein. | 0.414 |
AAY42_04940 | AAY42_03220 | AAY42_04940 | AAY42_03220 | tRNA modification GTPase. | Metalloprotease. | 0.404 |
AAY42_04940 | AAY42_03920 | AAY42_04940 | AAY42_03920 | tRNA modification GTPase. | DEAD/DEAH box helicase. | 0.475 |
AAY42_04940 | AAY42_04175 | AAY42_04940 | AAY42_04175 | tRNA modification GTPase. | DNA topoisomerase IV subunit A. | 0.401 |
AAY42_04940 | AAY42_05695 | AAY42_04940 | AAY42_05695 | tRNA modification GTPase. | Uncharacterized protein. | 0.471 |
AAY42_04940 | AAY42_15875 | AAY42_04940 | AAY42_15875 | tRNA modification GTPase. | Glycine dehydrogenase. | 0.574 |
AAY42_04940 | AAY42_15880 | AAY42_04940 | AAY42_15880 | tRNA modification GTPase. | RNA polymerase sigma-70 factor; Belongs to the sigma-70 factor family. ECF subfamily. | 0.475 |
AAY42_04940 | mnmE | AAY42_04940 | AAY42_04945 | tRNA modification GTPase. | tRNA modification GTPase MnmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.592 |
AAY42_05695 | AAY42_04940 | AAY42_05695 | AAY42_04940 | Uncharacterized protein. | tRNA modification GTPase. | 0.471 |
AAY42_15875 | AAY42_03920 | AAY42_15875 | AAY42_03920 | Glycine dehydrogenase. | DEAD/DEAH box helicase. | 0.665 |
AAY42_15875 | AAY42_04940 | AAY42_15875 | AAY42_04940 | Glycine dehydrogenase. | tRNA modification GTPase. | 0.574 |
AAY42_15875 | AAY42_15880 | AAY42_15875 | AAY42_15880 | Glycine dehydrogenase. | RNA polymerase sigma-70 factor; Belongs to the sigma-70 factor family. ECF subfamily. | 0.894 |
AAY42_15880 | AAY42_04940 | AAY42_15880 | AAY42_04940 | RNA polymerase sigma-70 factor; Belongs to the sigma-70 factor family. ECF subfamily. | tRNA modification GTPase. | 0.475 |
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