STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAY42_05080PglD_N domain-containing protein. (218 aa)    
Predicted Functional Partners:
AAY42_05075
Bac_transf domain-containing protein.
 
  
 0.934
AAY42_04990
Pyridoxal phosphate-dependent aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.847
AAY42_05070
Uncharacterized protein.
 
    0.756
AAY42_09425
Pleiotropic regulatory protein; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.729
AAY42_02155
D-3-phosphoglycerate dehydrogenase; Catalyzes the reversible oxidation of 3-phospho-D-glycerate to 3-phosphonooxypyruvate, the first step of the phosphorylated L- serine biosynthesis pathway. Also catalyzes the reversible oxidation of 2-hydroxyglutarate to 2-oxoglutarate; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.689
AAY42_02875
Glutamine--scyllo-inositol aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.653
AAY42_04985
Polysaccharide biosynthesis protein.
 
  
 0.651
AAY42_04975
Tyrosine protein kinase.
 
  
 0.493
AAY42_09790
Response regulatory domain-containing protein.
 
  
 0.429
AAY42_09780
Uncharacterized protein.
  
  
 0.417
Your Current Organism:
Flagellimonas eckloniae
NCBI taxonomy Id: 346185
Other names: F. eckloniae, Flagellimonas eckloniae Bae et al. 2007, Flagellimonas sp. DK169, Flavobacteriaceae bacterium DOKDO 007, JCM 13831, KCCM 42307, strain DOKDO 007
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.