Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AAY42_03180 | AAY42_04935 | AAY42_03180 | AAY42_04935 | DNA helicase. | Beta sliding clamp; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication a [...] | 0.919 |
AAY42_03180 | AAY42_05545 | AAY42_03180 | AAY42_05545 | DNA helicase. | ATP-dependent endonuclease. | 0.634 |
AAY42_03180 | AAY42_13275 | AAY42_03180 | AAY42_13275 | DNA helicase. | DNA helicase. | 0.508 |
AAY42_04935 | AAY42_03180 | AAY42_04935 | AAY42_03180 | Beta sliding clamp; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication a [...] | DNA helicase. | 0.919 |
AAY42_04935 | AAY42_05545 | AAY42_04935 | AAY42_05545 | Beta sliding clamp; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication a [...] | ATP-dependent endonuclease. | 0.865 |
AAY42_05525 | AAY42_05530 | AAY42_05525 | AAY42_05530 | Alcohol dehydrogenase. | HAD family hydrolase. | 0.798 |
AAY42_05525 | AAY42_05540 | AAY42_05525 | AAY42_05540 | Alcohol dehydrogenase. | Membrane protein. | 0.730 |
AAY42_05525 | AAY42_05545 | AAY42_05525 | AAY42_05545 | Alcohol dehydrogenase. | ATP-dependent endonuclease. | 0.642 |
AAY42_05525 | AAY42_05550 | AAY42_05525 | AAY42_05550 | Alcohol dehydrogenase. | Uncharacterized protein. | 0.423 |
AAY42_05525 | AAY42_05555 | AAY42_05525 | AAY42_05555 | Alcohol dehydrogenase. | Uncharacterized protein. | 0.423 |
AAY42_05525 | kdsB | AAY42_05525 | AAY42_05535 | Alcohol dehydrogenase. | 3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. | 0.979 |
AAY42_05530 | AAY42_05525 | AAY42_05530 | AAY42_05525 | HAD family hydrolase. | Alcohol dehydrogenase. | 0.798 |
AAY42_05530 | AAY42_05540 | AAY42_05530 | AAY42_05540 | HAD family hydrolase. | Membrane protein. | 0.730 |
AAY42_05530 | AAY42_05545 | AAY42_05530 | AAY42_05545 | HAD family hydrolase. | ATP-dependent endonuclease. | 0.654 |
AAY42_05530 | AAY42_05550 | AAY42_05530 | AAY42_05550 | HAD family hydrolase. | Uncharacterized protein. | 0.439 |
AAY42_05530 | AAY42_05555 | AAY42_05530 | AAY42_05555 | HAD family hydrolase. | Uncharacterized protein. | 0.519 |
AAY42_05530 | kdsB | AAY42_05530 | AAY42_05535 | HAD family hydrolase. | 3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. | 0.826 |
AAY42_05540 | AAY42_05525 | AAY42_05540 | AAY42_05525 | Membrane protein. | Alcohol dehydrogenase. | 0.730 |
AAY42_05540 | AAY42_05530 | AAY42_05540 | AAY42_05530 | Membrane protein. | HAD family hydrolase. | 0.730 |
AAY42_05540 | AAY42_05545 | AAY42_05540 | AAY42_05545 | Membrane protein. | ATP-dependent endonuclease. | 0.730 |
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