STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAY42_07705Short-chain dehydrogenase. (253 aa)    
Predicted Functional Partners:
AAY42_07710
MFS transporter.
 
    0.876
AAY42_07715
GntR family transcriptional regulator.
 
 
  0.816
AAY42_07700
Oxidoreductase.
 
    
0.791
AAY42_01715
3-hydroxyacyl-CoA dehydrogenase.
  
 0.785
AAY42_15700
Glutamate synthase.
     
 0.780
AAY42_07360
Methyltransferase.
 
      0.772
AAY42_08805
Alginate lyase.
  
     0.732
AAY42_07720
Alginate lyase.
 
     0.717
AAY42_12390
Flavodoxin reductase.
   
 0.700
AAY42_07750
Heparinase.
  
     0.697
Your Current Organism:
Flagellimonas eckloniae
NCBI taxonomy Id: 346185
Other names: F. eckloniae, Flagellimonas eckloniae Bae et al. 2007, Flagellimonas sp. DK169, Flavobacteriaceae bacterium DOKDO 007, JCM 13831, KCCM 42307, strain DOKDO 007
Server load: high (82%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.