STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAY42_07760Uncharacterized protein. (239 aa)    
Predicted Functional Partners:
AAY42_06420
Ureidoglycolate lyase.
   
  0.905
AAY42_07745
Cupin.
 
     0.592
AAY42_07755
Alginate lyase.
       0.545
AAY42_07750
Heparinase.
       0.525
AAY42_02135
DEAD/DEAH box helicase; Belongs to the DEAD box helicase family.
    
 
 0.432
AAY42_15095
DEAD/DEAH box helicase; Belongs to the DEAD box helicase family.
    
 
 0.432
AAY42_07625
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
    
  0.403
AAY42_00450
D-arabinose 5-phosphate isomerase; Belongs to the SIS family. GutQ/KpsF subfamily.
    
  0.402
Your Current Organism:
Flagellimonas eckloniae
NCBI taxonomy Id: 346185
Other names: F. eckloniae, Flagellimonas eckloniae Bae et al. 2007, Flagellimonas sp. DK169, Flavobacteriaceae bacterium DOKDO 007, JCM 13831, KCCM 42307, strain DOKDO 007
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.