STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAY42_08115RNA polymerase sigma-70 factor; Belongs to the sigma-70 factor family. ECF subfamily. (189 aa)    
Predicted Functional Partners:
AAY42_08110
Uncharacterized protein.
 
     0.799
AAY42_06735
RNA polymerase; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.773
AAY42_07270
RNA polymerase sigma-70 factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.765
AAY42_09310
Uncharacterized protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.765
AAY42_07255
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.758
AAY42_11405
Uncharacterized protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.756
AAY42_07330
RNA polymerase sigma-70 factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.752
AAY42_16290
RNA polymerase sigma-70 factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.718
AAY42_05820
RNA polymerase sigma70 factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.685
AAY42_15590
RNA polymerase ECF-type sigma factor, sigma70 superfamily protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.647
Your Current Organism:
Flagellimonas eckloniae
NCBI taxonomy Id: 346185
Other names: F. eckloniae, Flagellimonas eckloniae Bae et al. 2007, Flagellimonas sp. DK169, Flavobacteriaceae bacterium DOKDO 007, JCM 13831, KCCM 42307, strain DOKDO 007
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.