STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAY42_10455CHAT domain-containing protein. (1073 aa)    
Predicted Functional Partners:
AAY42_10450
TPR_REGION domain-containing protein.
 
   
 0.954
AAY42_10445
Sigma70_r2 domain-containing protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.936
AAY42_01690
Trehalose-6-phosphate synthase.
   
    0.718
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.670
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.623
AAY42_10440
Uncharacterized protein.
       0.551
AAY42_04830
TPR_REGION domain-containing protein.
 
     0.495
AAY42_04420
Uncharacterized protein.
  
    0.493
AAY42_10435
Uncharacterized protein.
       0.442
AAY42_05860
Uncharacterized protein.
  
     0.411
Your Current Organism:
Flagellimonas eckloniae
NCBI taxonomy Id: 346185
Other names: F. eckloniae, Flagellimonas eckloniae Bae et al. 2007, Flagellimonas sp. DK169, Flavobacteriaceae bacterium DOKDO 007, JCM 13831, KCCM 42307, strain DOKDO 007
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.