STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAY42_10500Siroheme synthase. (204 aa)    
Predicted Functional Partners:
AAY42_10525
Uroporphyrin-III methyltransferase; Belongs to the precorrin methyltransferase family.
 
 0.998
AAY42_08255
Uroporphyrin-III methyltransferase; Belongs to the precorrin methyltransferase family.
 
 0.997
AAY42_08260
Nitrite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
  
 0.862
hemL
Glutamate-1-semialdehyde 2,1-aminomutase.
  
 0.814
AAY42_10495
Uncharacterized protein.
       0.777
AAY42_10505
Histidine kinase.
       0.775
AAY42_10510
Uncharacterized protein.
       0.719
AAY42_10515
Nitrite reductase.
  
  
 0.714
AAY42_11890
Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
 
 
 0.705
AAY42_11925
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
 
  
 0.649
Your Current Organism:
Flagellimonas eckloniae
NCBI taxonomy Id: 346185
Other names: F. eckloniae, Flagellimonas eckloniae Bae et al. 2007, Flagellimonas sp. DK169, Flavobacteriaceae bacterium DOKDO 007, JCM 13831, KCCM 42307, strain DOKDO 007
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