STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAY42_12975Uncharacterized protein. (513 aa)    
Predicted Functional Partners:
AAY42_08745
Uncharacterized protein.
  
     0.735
AAY42_01335
SGNH_hydro domain-containing protein.
  
     0.727
AAY42_06485
Uncharacterized protein.
  
     0.712
AAY42_06525
Alpha-L-fucosidase.
  
     0.689
AAY42_01210
Alpha-L-fucosidase.
  
     0.687
AAY42_17155
Lipoprotein.
 
     0.687
AAY42_08680
Uncharacterized protein.
  
     0.683
AAY42_06325
Uncharacterized protein.
  
     0.681
AAY42_07795
Alpha-L-fucosidase.
  
     0.659
AAY42_08725
Uncharacterized protein.
  
     0.645
Your Current Organism:
Flagellimonas eckloniae
NCBI taxonomy Id: 346185
Other names: F. eckloniae, Flagellimonas eckloniae Bae et al. 2007, Flagellimonas sp. DK169, Flavobacteriaceae bacterium DOKDO 007, JCM 13831, KCCM 42307, strain DOKDO 007
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.