STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAY42_14780Diphosphomevalonate decarboxylase. (361 aa)    
Predicted Functional Partners:
AAY42_14785
Mevalonate kinase.
 
 
 0.982
AAY42_06815
Isopentenyl-diphosphate delta-isomerase.
 
 
 0.972
AAY42_15040
GHMP kinase.
 
 
 0.959
AAY42_02225
Hydrolase.
  
 
 0.911
AAY42_15045
3-hydroxy-3-methylglutaryl coenzyme A reductase; Belongs to the HMG-CoA reductase family.
 
 
 0.896
AAY42_11510
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
 0.893
AAY42_14775
CrtK.
       0.591
AAY42_05210
DUF4159 domain-containing protein.
   
 
 0.573
AAY42_17350
Uncharacterized protein.
   
 
 0.573
AAY42_06390
Lactate dehydrogenase.
    
 0.538
Your Current Organism:
Flagellimonas eckloniae
NCBI taxonomy Id: 346185
Other names: F. eckloniae, Flagellimonas eckloniae Bae et al. 2007, Flagellimonas sp. DK169, Flavobacteriaceae bacterium DOKDO 007, JCM 13831, KCCM 42307, strain DOKDO 007
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.