Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEL53406.1 | SEL73744.1 | SAMN05216500_10367 | SAMN05216500_10514 | Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | Competence protein ComEC. | 0.445 |
SEL53406.1 | SEM09162.1 | SAMN05216500_10367 | SAMN05216500_1118 | Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | DNA processing protein. | 0.581 |
SEL53406.1 | recG | SAMN05216500_10367 | SAMN05216500_11285 | Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. | 0.510 |
SEL64391.1 | SEL73744.1 | SAMN05216500_10448 | SAMN05216500_10514 | Type 4 prepilin peptidase 1 Aspartic peptidase. MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | Competence protein ComEC. | 0.686 |
SEL64391.1 | SEM09162.1 | SAMN05216500_10448 | SAMN05216500_1118 | Type 4 prepilin peptidase 1 Aspartic peptidase. MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | DNA processing protein. | 0.637 |
SEL73744.1 | SEL53406.1 | SAMN05216500_10514 | SAMN05216500_10367 | Competence protein ComEC. | Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.445 |
SEL73744.1 | SEL64391.1 | SAMN05216500_10514 | SAMN05216500_10448 | Competence protein ComEC. | Type 4 prepilin peptidase 1 Aspartic peptidase. MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | 0.686 |
SEL73744.1 | SEL96702.1 | SAMN05216500_10514 | SAMN05216500_108113 | Competence protein ComEC. | Magnesium chelatase family protein. | 0.452 |
SEL73744.1 | SEM09162.1 | SAMN05216500_10514 | SAMN05216500_1118 | Competence protein ComEC. | DNA processing protein. | 0.856 |
SEL73744.1 | SEM15269.1 | SAMN05216500_10514 | SAMN05216500_11286 | Competence protein ComEC. | comF family protein. | 0.833 |
SEL73744.1 | recA | SAMN05216500_10514 | SAMN05216500_102114 | Competence protein ComEC. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.509 |
SEL73744.1 | recG | SAMN05216500_10514 | SAMN05216500_11285 | Competence protein ComEC. | ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. | 0.499 |
SEL96702.1 | SEL73744.1 | SAMN05216500_108113 | SAMN05216500_10514 | Magnesium chelatase family protein. | Competence protein ComEC. | 0.452 |
SEL96702.1 | SEM09162.1 | SAMN05216500_108113 | SAMN05216500_1118 | Magnesium chelatase family protein. | DNA processing protein. | 0.838 |
SEL96702.1 | SEM15269.1 | SAMN05216500_108113 | SAMN05216500_11286 | Magnesium chelatase family protein. | comF family protein. | 0.805 |
SEM09138.1 | SEM09162.1 | SAMN05216500_1117 | SAMN05216500_1118 | LysM domain-containing protein. | DNA processing protein. | 0.840 |
SEM09138.1 | def-2 | SAMN05216500_1117 | SAMN05216500_1116 | LysM domain-containing protein. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.719 |
SEM09138.1 | tsaC | SAMN05216500_1117 | SAMN05216500_1119 | LysM domain-containing protein. | L-threonylcarbamoyladenylate synthase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Catalyzes the conversion of L-threonine, HCO(3)(-)/CO(2) and ATP to give threonylcarbamoyl-AMP (TC-AMP) as the acyladenylate intermediate, with the release of diphosphate. | 0.752 |
SEM09162.1 | SEL53406.1 | SAMN05216500_1118 | SAMN05216500_10367 | DNA processing protein. | Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.581 |
SEM09162.1 | SEL64391.1 | SAMN05216500_1118 | SAMN05216500_10448 | DNA processing protein. | Type 4 prepilin peptidase 1 Aspartic peptidase. MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | 0.637 |
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