C5167_036478 protein (Papaver somniferum) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

C5167_036478

Histone H2A; Belongs to the histone H2A family. (148 aa)

Predicted Functional Partners:

C5167_017524

0.755

C5167_033615

0.733

C5167_001098

0.733

C5167_006491

0.707

C5167_017398

0.693

C5167_020688

0.693

C5167_024293

0.650

C5167_006496

0.648

C5167_007080

0.629

C5167_017118

0.627

Your Current Organism:

Papaver somniferum

NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5167_001098	C5167_006491	A0A4Y7KW22	A0A4Y7JHF4	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.965
C5167_001098	C5167_006496	A0A4Y7KW22	A0A4Y7JHG4	Uncharacterized protein.	Histone domain-containing protein; Belongs to the histone H2B family.	0.808
C5167_001098	C5167_007080	A0A4Y7KW22	A0A4Y7JGW3	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.808
C5167_001098	C5167_017118	A0A4Y7KW22	A0A4Y7ILT4	Uncharacterized protein.	Uncharacterized protein.	0.652
C5167_001098	C5167_017398	A0A4Y7KW22	A0A4Y7IJC3	Uncharacterized protein.	Histone H2A; Belongs to the histone H2A family.	0.908
C5167_001098	C5167_017524	A0A4Y7KW22	A0A4Y7INN5	Uncharacterized protein.	Uncharacterized protein.	0.839
C5167_001098	C5167_020688	A0A4Y7KW22	A0A4Y7IXX8	Uncharacterized protein.	Histone H2A; Belongs to the histone H2A family.	0.908
C5167_001098	C5167_024293	A0A4Y7KW22	A0A4Y7JN65	Uncharacterized protein.	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	0.582
C5167_001098	C5167_033615	A0A4Y7KW22	A0A4Y7KCC4	Uncharacterized protein.	Uncharacterized protein.	0.692
C5167_001098	C5167_036478	A0A4Y7KW22	A0A4Y7I3T9	Uncharacterized protein.	Histone H2A; Belongs to the histone H2A family.	0.733
C5167_006491	C5167_001098	A0A4Y7JHF4	A0A4Y7KW22	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.965
C5167_006491	C5167_006496	A0A4Y7JHF4	A0A4Y7JHG4	Ubiquitin-like domain-containing protein.	Histone domain-containing protein; Belongs to the histone H2B family.	0.670
C5167_006491	C5167_007080	A0A4Y7JHF4	A0A4Y7JGW3	Ubiquitin-like domain-containing protein.	Histone H2B; Belongs to the histone H2B family.	0.670
C5167_006491	C5167_017118	A0A4Y7JHF4	A0A4Y7ILT4	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.567
C5167_006491	C5167_017524	A0A4Y7JHF4	A0A4Y7INN5	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.533
C5167_006491	C5167_024293	A0A4Y7JHF4	A0A4Y7JN65	Ubiquitin-like domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	0.894
C5167_006491	C5167_033615	A0A4Y7JHF4	A0A4Y7KCC4	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.965
C5167_006491	C5167_036478	A0A4Y7JHF4	A0A4Y7I3T9	Ubiquitin-like domain-containing protein.	Histone H2A; Belongs to the histone H2A family.	0.707
C5167_006496	C5167_001098	A0A4Y7JHG4	A0A4Y7KW22	Histone domain-containing protein; Belongs to the histone H2B family.	Uncharacterized protein.	0.808
C5167_006496	C5167_006491	A0A4Y7JHG4	A0A4Y7JHF4	Histone domain-containing protein; Belongs to the histone H2B family.	Ubiquitin-like domain-containing protein.	0.670

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Network Stats

number of nodes:

11

number of edges:

35

average node degree:

6.36

avg. local clustering coefficient:

0.565

expected number of edges:

13

PPI enrichment p-value:

1.46e-07

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0019774

Proteasome core complex, beta-subunit complex

2 of 15

2.49

0.94

0.0190

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:46819

Mostly uncharacterized, incl. Domain of unknown function (DUF4408), and acyl-CoA hydrolase activity

6 of 36

2.59

5.39

3.05e-11

CL:46822

Mixed, incl. Domain of unknown function (DUF4408), and acyl-CoA hydrolase activity

5 of 16

2.86

5.13

2.54e-10

CL:46824

acyl-CoA hydrolase activity, and Domain of unknown function (DUF4408)

3 of 5

3.15

3.02

3.30e-06

CL:16392

Siderophore metabolic process, and Aldo/keto reductase family

2 of 11

2.63

1.08

0.0109

CL:8159

Proteasome subunit

2 of 25

2.27

0.78

0.0367

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0016006

Nebenkern

2 of 2

3.37

1.59

0.0014

GOCC:0019774

Proteasome core complex, beta-subunit complex

2 of 15

2.49

0.99

0.0154

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0888

Threonine protease

2 of 29

2.21

0.87

0.0245

KW-0407

Ion channel

2 of 50

1.97

0.77

0.0348

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