C5167_036615 protein (Papaver somniferum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C5167_036615

Uncharacterized protein; Belongs to the FPP/GGPP synthase family. (416 aa)

Predicted Functional Partners:

C5167_015145

0.960

C5167_038388

0.900

C5167_018955

0.891

C5167_019450

0.891

C5167_009612

0.891

C5167_002845

0.839

C5167_046831

0.839

C5167_047878

0.787

C5167_047885

0.787

C5167_047882

0.787

Your Current Organism:

Papaver somniferum

NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5167_002845	C5167_009612	A0A4Y7L0E7	A0A4Y7K0R8	Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids. Belongs to the diphosphomevalonate decarboxylase family.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.830
C5167_002845	C5167_015145	A0A4Y7L0E7	A0A4Y7J8B8	Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids. Belongs to the diphosphomevalonate decarboxylase family.	Nudix hydrolase domain-containing protein.	0.934
C5167_002845	C5167_018955	A0A4Y7L0E7	A0A4Y7IRV2	Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids. Belongs to the diphosphomevalonate decarboxylase family.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.830
C5167_002845	C5167_019450	A0A4Y7L0E7	A0A4Y7ITJ4	Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids. Belongs to the diphosphomevalonate decarboxylase family.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.830
C5167_002845	C5167_036615	A0A4Y7L0E7	A0A4Y7I8D0	Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids. Belongs to the diphosphomevalonate decarboxylase family.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.839
C5167_002845	C5167_038388	A0A4Y7L0E7	A0A4Y7IDH1	Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids. Belongs to the diphosphomevalonate decarboxylase family.	Uncharacterized protein.	0.688
C5167_009612	C5167_002845	A0A4Y7K0R8	A0A4Y7L0E7	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids. Belongs to the diphosphomevalonate decarboxylase family.	0.830
C5167_009612	C5167_015145	A0A4Y7K0R8	A0A4Y7J8B8	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Nudix hydrolase domain-containing protein.	0.978
C5167_009612	C5167_018955	A0A4Y7K0R8	A0A4Y7IRV2	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.901
C5167_009612	C5167_019450	A0A4Y7K0R8	A0A4Y7ITJ4	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.901
C5167_009612	C5167_036615	A0A4Y7K0R8	A0A4Y7I8D0	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.891
C5167_009612	C5167_038388	A0A4Y7K0R8	A0A4Y7IDH1	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Uncharacterized protein.	0.936
C5167_009612	C5167_046831	A0A4Y7K0R8	A0A4Y7LIV5	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids. Belongs to the diphosphomevalonate decarboxylase family.	0.830
C5167_009612	C5167_047878	A0A4Y7K0R8	A0A4Y7LK59	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Uncharacterized protein.	0.702
C5167_009612	C5167_047882	A0A4Y7K0R8	A0A4Y7LKU2	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Uncharacterized protein.	0.702
C5167_009612	C5167_047885	A0A4Y7K0R8	A0A4Y7LKE3	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Uncharacterized protein.	0.702
C5167_015145	C5167_002845	A0A4Y7J8B8	A0A4Y7L0E7	Nudix hydrolase domain-containing protein.	Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids. Belongs to the diphosphomevalonate decarboxylase family.	0.934
C5167_015145	C5167_009612	A0A4Y7J8B8	A0A4Y7K0R8	Nudix hydrolase domain-containing protein.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.978
C5167_015145	C5167_018955	A0A4Y7J8B8	A0A4Y7IRV2	Nudix hydrolase domain-containing protein.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.978
C5167_015145	C5167_019450	A0A4Y7J8B8	A0A4Y7ITJ4	Nudix hydrolase domain-containing protein.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.978