STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C5167_040880Amidase domain-containing protein. (678 aa)    
Predicted Functional Partners:
GATB
Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatB/GatE family. GatB subfamily.
 
 0.991
C5167_014990
Fe2OG dioxygenase domain-containing protein.
     
  0.900
C5167_024618
Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.
     
  0.900
C5167_017579
AA_TRNA_LIGASE_II domain-containing protein.
  
 0.889
C5167_017171
tRNA-synt_1c domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.753
C5167_037666
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
 0.710
C5167_017929
Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.
    
 0.710
C5167_013274
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
 0.710
C5167_006455
Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.
    
 0.710
C5167_023461
Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.
    
 0.710
Your Current Organism:
Papaver somniferum
NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.