STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C5167_041315tRNA-dihydrouridine synthase; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs; Belongs to the dus family. (309 aa)    
Predicted Functional Partners:
C5167_017274
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.824
C5167_042485
Protein kinase domain-containing protein.
  
 
 0.824
C5167_043733
tRNA (adenine(58)-N(1))-methyltransferase.
   
  
 0.718
C5167_036837
Probable ribosome biogenesis protein C5167_036837; Probable pre-rRNA processing protein involved in ribosome biogenesis.
   
  
 0.707
C5167_012658
Brix domain-containing protein.
   
    0.700
C5167_023770
Brix domain-containing protein.
   
    0.700
C5167_017651
Uncharacterized protein.
  
 
 0.680
C5167_014130
tRNA pseudouridine synthase.
  
 
 0.680
C5167_002084
CP-type G domain-containing protein.
   
    0.657
C5167_038330
AA_TRNA_LIGASE_II domain-containing protein.
  
 
 0.650
Your Current Organism:
Papaver somniferum
NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy
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