STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C5167_018874Rab-GAP TBC domain-containing protein. (676 aa)    
Predicted Functional Partners:
C5167_031434
Uncharacterized protein.
      
 0.708
C5167_012066
Uncharacterized protein.
      
 0.621
C5167_015316
WD_REPEATS_REGION domain-containing protein.
      
 0.615
C5167_034259
WD_REPEATS_REGION domain-containing protein.
      
 0.615
C5167_009355
Autophagy-related protein.
   
 0.565
C5167_019071
Autophagy-related protein.
   
 0.565
C5167_010411
Autophagy-related protein.
   
 0.565
C5167_032304
Autophagy-related protein.
   
 0.565
C5167_036985
Uncharacterized protein.
   
 0.549
C5167_013954
Uncharacterized protein.
   
 0.549
Your Current Organism:
Papaver somniferum
NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.