C5167_012457 protein (Papaver somniferum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C5167_012457

Uncharacterized protein. (112 aa)

Predicted Functional Partners:

C5167_037913

0.623

C5167_010296

0.623

C5167_040489

0.623

C5167_017452

0.623

C5167_018541

0.623

C5167_019900

0.623

C5167_012963

0.623

C5167_013667

0.623

C5167_025352

0.623

C5167_025931

0.623

Your Current Organism:

Papaver somniferum

NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5167_010296	C5167_012457	A0A4Y7IBK6	A0A4Y7J0L8	Uncharacterized protein.	Uncharacterized protein.	0.623
C5167_010296	C5167_012963	A0A4Y7IBK6	A0A4Y7J2Z6	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	0.853
C5167_010296	C5167_013667	A0A4Y7IBK6	A0A4Y7J587	Uncharacterized protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.853
C5167_010296	C5167_017452	A0A4Y7IBK6	A0A4Y7IJG7	Uncharacterized protein.	Ribosomal_L18e/L15P domain-containing protein.	0.853
C5167_010296	C5167_018541	A0A4Y7IBK6	A0A4Y7IMJ1	Uncharacterized protein.	Uncharacterized protein.	0.859
C5167_010296	C5167_019900	A0A4Y7IBK6	A0A4Y7IRG4	Uncharacterized protein.	Ribosomal_S10 domain-containing protein.	0.853
C5167_010296	C5167_025352	A0A4Y7IBK6	A0A4Y7JR81	Uncharacterized protein.	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	0.853
C5167_010296	C5167_025931	A0A4Y7IBK6	A0A4Y7JW30	Uncharacterized protein.	Ribosomal_L30 domain-containing protein.	0.859
C5167_010296	C5167_037913	A0A4Y7IBK6	A0A4Y7IAX3	Uncharacterized protein.	Uncharacterized protein.	0.859
C5167_010296	C5167_040489	A0A4Y7IBK6	A0A4Y7IHJ5	Uncharacterized protein.	RIBOSOMAL_L9 domain-containing protein.	0.853
C5167_012457	C5167_010296	A0A4Y7J0L8	A0A4Y7IBK6	Uncharacterized protein.	Uncharacterized protein.	0.623
C5167_012457	C5167_012963	A0A4Y7J0L8	A0A4Y7J2Z6	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	0.623
C5167_012457	C5167_013667	A0A4Y7J0L8	A0A4Y7J587	Uncharacterized protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.623
C5167_012457	C5167_017452	A0A4Y7J0L8	A0A4Y7IJG7	Uncharacterized protein.	Ribosomal_L18e/L15P domain-containing protein.	0.623
C5167_012457	C5167_018541	A0A4Y7J0L8	A0A4Y7IMJ1	Uncharacterized protein.	Uncharacterized protein.	0.623
C5167_012457	C5167_019900	A0A4Y7J0L8	A0A4Y7IRG4	Uncharacterized protein.	Ribosomal_S10 domain-containing protein.	0.623
C5167_012457	C5167_025352	A0A4Y7J0L8	A0A4Y7JR81	Uncharacterized protein.	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	0.623
C5167_012457	C5167_025931	A0A4Y7J0L8	A0A4Y7JW30	Uncharacterized protein.	Ribosomal_L30 domain-containing protein.	0.623
C5167_012457	C5167_037913	A0A4Y7J0L8	A0A4Y7IAX3	Uncharacterized protein.	Uncharacterized protein.	0.623
C5167_012457	C5167_040489	A0A4Y7J0L8	A0A4Y7IHJ5	Uncharacterized protein.	RIBOSOMAL_L9 domain-containing protein.	0.623