STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C5167_013012Uncharacterized protein. (168 aa)    
Predicted Functional Partners:
C5167_015334
Uncharacterized protein.
    
 0.772
C5167_034207
Uncharacterized protein.
    
 0.772
C5167_025284
Uncharacterized protein.
  
  
 0.530
C5167_025283
Uncharacterized protein.
  
  
 0.530
C5167_000418
Uncharacterized protein.
  
     0.530
C5167_015035
Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.
   
 
 0.524
C5167_048858
FAD_binding_7 domain-containing protein.
  
     0.505
C5167_002396
Uncharacterized protein.
    
   0.497
C5167_048736
Photolyase/cryptochrome alpha/beta domain-containing protein.
   
  
 0.492
C5167_039162
Uncharacterized protein.
    
 
 0.448
Your Current Organism:
Papaver somniferum
NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy
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