STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C5167_013329MATH domain-containing protein. (166 aa)    
Predicted Functional Partners:
C5167_006491
Ubiquitin-like domain-containing protein.
    
  0.673
C5167_037877
HECT domain-containing protein.
   
 
 0.415
C5167_017910
Uncharacterized protein.
   
 
 0.415
C5167_024773
Uncharacterized protein.
   
 
 0.415
C5167_010413
HECT domain-containing protein.
   
 
 0.415
C5167_034949
Uncharacterized protein.
   
 
 0.415
C5167_034947
Uncharacterized protein.
   
 
 0.415
C5167_000633
HECT domain-containing protein.
   
 
 0.415
C5167_046560
HECT domain-containing protein.
   
 
 0.415
C5167_003708
Ubiquitin-like domain-containing protein.
   
 0.408
Your Current Organism:
Papaver somniferum
NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.