C5167_013553 protein (Papaver somniferum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C5167_013553

Uncharacterized protein. (451 aa)

Predicted Functional Partners:

C5167_008771

0.987

C5167_036597

0.984

C5167_011529

0.984

C5167_017112

0.979

C5167_009045

0.979

C5167_009043

0.979

C5167_003497

0.972

C5167_047182

0.972

C5167_031312

0.970

C5167_017085

0.965

Your Current Organism:

Papaver somniferum

NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5167_003497	C5167_008771	A0A4Y7L4J0	A0A4Y7JYL3	WD_REPEATS_REGION domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.968
C5167_003497	C5167_009043	A0A4Y7L4J0	A0A4Y7K086	WD_REPEATS_REGION domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.506
C5167_003497	C5167_009045	A0A4Y7L4J0	A0A4Y7JZY5	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.506
C5167_003497	C5167_011529	A0A4Y7L4J0	A0A4Y7K6K1	WD_REPEATS_REGION domain-containing protein.	CPSF_A domain-containing protein.	0.969
C5167_003497	C5167_013553	A0A4Y7L4J0	A0A4Y7J4M3	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.972
C5167_003497	C5167_017112	A0A4Y7L4J0	A0A4Y7IIG6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.506
C5167_003497	C5167_031312	A0A4Y7L4J0	A0A4Y7K7T2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.935
C5167_003497	C5167_036597	A0A4Y7L4J0	A0A4Y7I4H6	WD_REPEATS_REGION domain-containing protein.	CPSF_A domain-containing protein.	0.969
C5167_003497	C5167_047182	A0A4Y7L4J0	A0A4Y7LGN6	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.900
C5167_008771	C5167_003497	A0A4Y7JYL3	A0A4Y7L4J0	CULLIN_2 domain-containing protein; Belongs to the cullin family.	WD_REPEATS_REGION domain-containing protein.	0.968
C5167_008771	C5167_009043	A0A4Y7JYL3	A0A4Y7K086	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Helicase ATP-binding domain-containing protein.	0.938
C5167_008771	C5167_009045	A0A4Y7JYL3	A0A4Y7JZY5	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.938
C5167_008771	C5167_011529	A0A4Y7JYL3	A0A4Y7K6K1	CULLIN_2 domain-containing protein; Belongs to the cullin family.	CPSF_A domain-containing protein.	0.994
C5167_008771	C5167_013553	A0A4Y7JYL3	A0A4Y7J4M3	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.987
C5167_008771	C5167_017085	A0A4Y7JYL3	A0A4Y7IMG4	CULLIN_2 domain-containing protein; Belongs to the cullin family.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.970
C5167_008771	C5167_017112	A0A4Y7JYL3	A0A4Y7IIG6	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.938
C5167_008771	C5167_031312	A0A4Y7JYL3	A0A4Y7K7T2	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.996
C5167_008771	C5167_036597	A0A4Y7JYL3	A0A4Y7I4H6	CULLIN_2 domain-containing protein; Belongs to the cullin family.	CPSF_A domain-containing protein.	0.994
C5167_008771	C5167_047182	A0A4Y7JYL3	A0A4Y7LGN6	CULLIN_2 domain-containing protein; Belongs to the cullin family.	WD_REPEATS_REGION domain-containing protein.	0.968
C5167_009043	C5167_003497	A0A4Y7K086	A0A4Y7L4J0	Helicase ATP-binding domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.506