C5167_015613 protein (Papaver somniferum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

C5167_015613

Extensin_2 domain-containing protein. (715 aa)

Predicted Functional Partners:

C5167_001433

0.819

C5167_022687

0.575

C5167_037998

0.551

C5167_013503

0.495

C5167_017704

0.494

C5167_014025

0.474

C5167_041119

0.472

C5167_047093

0.457

C5167_003435

0.453

C5167_038009

0.445

Your Current Organism:

Papaver somniferum

NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5167_001433	C5167_015613	A0A4Y7KYV6	A0A4Y7JAW2	Uncharacterized protein.	Extensin_2 domain-containing protein.	0.819
C5167_003435	C5167_015613	A0A4Y7L2Q3	A0A4Y7JAW2	LRRNT_2 domain-containing protein.	Extensin_2 domain-containing protein.	0.453
C5167_013503	C5167_015613	A0A4Y7J1G9	A0A4Y7JAW2	LRRNT_2 domain-containing protein.	Extensin_2 domain-containing protein.	0.495
C5167_014025	C5167_015613	A0A4Y7J534	A0A4Y7JAW2	Uncharacterized protein.	Extensin_2 domain-containing protein.	0.474
C5167_015613	C5167_001433	A0A4Y7JAW2	A0A4Y7KYV6	Extensin_2 domain-containing protein.	Uncharacterized protein.	0.819
C5167_015613	C5167_003435	A0A4Y7JAW2	A0A4Y7L2Q3	Extensin_2 domain-containing protein.	LRRNT_2 domain-containing protein.	0.453
C5167_015613	C5167_013503	A0A4Y7JAW2	A0A4Y7J1G9	Extensin_2 domain-containing protein.	LRRNT_2 domain-containing protein.	0.495
C5167_015613	C5167_014025	A0A4Y7JAW2	A0A4Y7J534	Extensin_2 domain-containing protein.	Uncharacterized protein.	0.474
C5167_015613	C5167_017704	A0A4Y7JAW2	A0A4Y7INI0	Extensin_2 domain-containing protein.	IPPc domain-containing protein.	0.494
C5167_015613	C5167_022687	A0A4Y7JAW2	A0A4Y7JLU4	Extensin_2 domain-containing protein.	Ipi1_N domain-containing protein.	0.575
C5167_015613	C5167_037998	A0A4Y7JAW2	A0A4Y7I7X8	Extensin_2 domain-containing protein.	ATP_bind_3 domain-containing protein.	0.551
C5167_015613	C5167_038009	A0A4Y7JAW2	A0A4Y7ICD0	Extensin_2 domain-containing protein.	Xyloglucan endotransglucosylase/hydrolase; Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. Belongs to the glycosyl hydrolase 16 family.	0.445
C5167_015613	C5167_041119	A0A4Y7JAW2	A0A4Y7IL69	Extensin_2 domain-containing protein.	Uncharacterized protein.	0.472
C5167_015613	C5167_047093	A0A4Y7JAW2	A0A4Y7LH64	Extensin_2 domain-containing protein.	LRRNT_2 domain-containing protein.	0.457
C5167_017704	C5167_015613	A0A4Y7INI0	A0A4Y7JAW2	IPPc domain-containing protein.	Extensin_2 domain-containing protein.	0.494
C5167_022687	C5167_015613	A0A4Y7JLU4	A0A4Y7JAW2	Ipi1_N domain-containing protein.	Extensin_2 domain-containing protein.	0.575
C5167_037998	C5167_015613	A0A4Y7I7X8	A0A4Y7JAW2	ATP_bind_3 domain-containing protein.	Extensin_2 domain-containing protein.	0.551
C5167_038009	C5167_015613	A0A4Y7ICD0	A0A4Y7JAW2	Xyloglucan endotransglucosylase/hydrolase; Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. Belongs to the glycosyl hydrolase 16 family.	Extensin_2 domain-containing protein.	0.445
C5167_041119	C5167_015613	A0A4Y7IL69	A0A4Y7JAW2	Uncharacterized protein.	Extensin_2 domain-containing protein.	0.472
C5167_047093	C5167_015613	A0A4Y7LH64	A0A4Y7JAW2	LRRNT_2 domain-containing protein.	Extensin_2 domain-containing protein.	0.457