C5167_005137 protein (Papaver somniferum) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

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[Homology]

Score

C5167_005137

Uncharacterized protein. (165 aa)

Predicted Functional Partners:

C5167_013624

0.845

C5167_032265

0.650

C5167_049884

0.650

C5167_020779

0.624

C5167_038532

0.609

C5167_010926

0.609

C5167_015854

0.608

C5167_023070

0.606

C5167_003432

0.606

C5167_040764

0.564

Your Current Organism:

Papaver somniferum

NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5167_003432	C5167_005137	A0A4Y7L4Y0	A0A4Y7JBE5	F-box domain-containing protein.	Uncharacterized protein.	0.606
C5167_003432	C5167_015854	A0A4Y7L4Y0	A0A4Y7JBI8	F-box domain-containing protein.	Uncharacterized protein.	0.996
C5167_005137	C5167_003432	A0A4Y7JBE5	A0A4Y7L4Y0	Uncharacterized protein.	F-box domain-containing protein.	0.606
C5167_005137	C5167_010926	A0A4Y7JBE5	A0A4Y7K1K3	Uncharacterized protein.	Peptidylprolyl isomerase.	0.609
C5167_005137	C5167_013624	A0A4Y7JBE5	A0A4Y7J0V8	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.845
C5167_005137	C5167_015854	A0A4Y7JBE5	A0A4Y7JBI8	Uncharacterized protein.	Uncharacterized protein.	0.608
C5167_005137	C5167_020779	A0A4Y7JBE5	A0A4Y7IXA4	Uncharacterized protein.	Uncharacterized protein.	0.624
C5167_005137	C5167_023070	A0A4Y7JBE5	A0A4Y7JKQ0	Uncharacterized protein.	PMD domain-containing protein.	0.606
C5167_005137	C5167_032265	A0A4Y7JBE5	A0A4Y7K8H0	Uncharacterized protein.	CP-type G domain-containing protein.	0.650
C5167_005137	C5167_038532	A0A4Y7JBE5	A0A4Y7I9H3	Uncharacterized protein.	Peptidylprolyl isomerase.	0.609
C5167_005137	C5167_040764	A0A4Y7JBE5	A0A4Y7IK35	Uncharacterized protein.	Uncharacterized protein.	0.564
C5167_005137	C5167_049884	A0A4Y7JBE5	A0A4Y7KR87	Uncharacterized protein.	CP-type G domain-containing protein.	0.650
C5167_010926	C5167_005137	A0A4Y7K1K3	A0A4Y7JBE5	Peptidylprolyl isomerase.	Uncharacterized protein.	0.609
C5167_010926	C5167_020779	A0A4Y7K1K3	A0A4Y7IXA4	Peptidylprolyl isomerase.	Uncharacterized protein.	0.636
C5167_013624	C5167_005137	A0A4Y7J0V8	A0A4Y7JBE5	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.845
C5167_013624	C5167_015854	A0A4Y7J0V8	A0A4Y7JBI8	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.785
C5167_013624	C5167_020779	A0A4Y7J0V8	A0A4Y7IXA4	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.904
C5167_013624	C5167_040764	A0A4Y7J0V8	A0A4Y7IK35	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.407
C5167_015854	C5167_003432	A0A4Y7JBI8	A0A4Y7L4Y0	Uncharacterized protein.	F-box domain-containing protein.	0.996
C5167_015854	C5167_005137	A0A4Y7JBI8	A0A4Y7JBE5	Uncharacterized protein.	Uncharacterized protein.	0.608

page 1 of 2

Network Stats

number of nodes:

11

number of edges:

55

average node degree:

10

avg. local clustering coefficient:

1

expected number of edges:

14

PPI enrichment p-value:

1.11e-16

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0042073

Intraciliary transport

7 of 36

2.65

6.81

4.18e-14

GO:0044782

Cilium organization

9 of 272

1.89

4.55

3.11e-13

GO:0060271

Cilium assembly

8 of 250

1.87

4.11

1.24e-11

GO:1905515

Non-motile cilium assembly

4 of 37

2.4

3.21

6.11e-07

GO:0035720

Intraciliary anterograde transport

2 of 2

3.37

2.03

0.00022

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0120170

Intraciliary transport particle B binding

2 of 2

3.37

1.48

0.0022

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0030992

Intraciliary transport particle B

10 of 18

3.11

13.77

4.68e-27

GO:0036064

Ciliary basal body

7 of 102

2.2

5.28

1.82e-12

GO:0005929

Cilium

10 of 506

1.66

3.82

3.95e-14

GO:0005815

Microtubule organizing center

8 of 427

1.64

3.15

1.58e-10

GO:0097546

Ciliary base

3 of 17

2.61

2.82

5.55e-06

(more ...)

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:3185

Intraciliary transport particle B

10 of 12

3.29

14.44

8.60e-28

CL:3188

Intraciliary transport particle B

5 of 5

3.37

6.86

3.16e-13

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-5620924

Intraflagellar transport

10 of 63

2.57

10.1

2.76e-22

MAP-5617833

Cilium Assembly

10 of 311

1.87

5.09

6.12e-16

MAP-1852241

Organelle biogenesis and maintenance

10 of 355

1.82

4.75

1.50e-15

MAP-5610787

Hedgehog off state

4 of 126

1.87

1.96

6.78e-05

MAP-5358351

Signaling by Hedgehog

4 of 176

1.72

1.68

0.00020

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005929

Cilium

5 of 335

1.54

1.52

0.00022

GOCC:0097546

Ciliary base

2 of 8

2.76

1.45

0.0023

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR019734

Tetratricopeptide repeat

4 of 122

1.88

1.5

0.00090

IPR011990

Tetratricopeptide-like helical domain superfamily

4 of 212

1.64

1.14

0.0039

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00028

Tetratricopeptide repeats

3 of 74

1.97

1.32

0.0026

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