STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C5167_004612Pectate lyase. (431 aa)    
Predicted Functional Partners:
C5167_040746
Uncharacterized protein.
     
 0.742
C5167_019532
Uncharacterized protein.
     
 0.741
C5167_040745
Uncharacterized protein.
     
 0.716
C5167_043144
Uncharacterized protein.
     
 0.716
C5167_022027
Uncharacterized protein.
     
 0.710
C5167_000059
Uncharacterized protein; Belongs to the glycosyl hydrolase 28 family.
     
 0.708
C5167_040729
Uncharacterized protein.
     
 0.678
C5167_019868
Pectinesterase.
   
 
 0.678
C5167_040935
Uncharacterized protein.
     
 0.662
C5167_040207
Uncharacterized protein.
     
 0.662
Your Current Organism:
Papaver somniferum
NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.