STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C5167_025785Uncharacterized protein. (154 aa)    
Predicted Functional Partners:
C5167_003708
Ubiquitin-like domain-containing protein.
    
 0.774
C5167_047115
Ubiquitin-like domain-containing protein.
    
 0.774
C5167_038706
CBF domain-containing protein.
   
  0.759
C5167_025661
Cir_N domain-containing protein.
    
 0.745
C5167_032597
Uncharacterized protein.
    
 0.740
C5167_020100
WD_REPEATS_REGION domain-containing protein.
   
 0.726
C5167_033736
WD_REPEATS_REGION domain-containing protein.
   
 0.714
C5167_010106
Uncharacterized protein.
   
 0.704
C5167_038924
Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.
   
 0.698
C5167_033421
Uncharacterized protein.
   
 0.682
Your Current Organism:
Papaver somniferum
NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy
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