STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C5167_008132Uncharacterized protein. (196 aa)    
Predicted Functional Partners:
C5167_037748
Uncharacterized protein.
   
    0.858
C5167_022995
Brix domain-containing protein.
   
  
 0.824
C5167_033421
Uncharacterized protein.
   
  
 0.772
C5167_012071
Uncharacterized protein.
   
    0.746
C5167_008315
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
    0.735
C5167_036837
Probable ribosome biogenesis protein C5167_036837; Probable pre-rRNA processing protein involved in ribosome biogenesis.
   
  
 0.732
C5167_006569
Brix domain-containing protein.
   
    0.712
C5167_023339
Brix domain-containing protein.
   
    0.712
C5167_037690
Uncharacterized protein.
   
 
 0.698
C5167_010234
Uncharacterized protein.
   
 
 0.698
Your Current Organism:
Papaver somniferum
NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy
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