STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C5167_010123Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits. (847 aa)    
Predicted Functional Partners:
C5167_020960
Uncharacterized protein.
   
 
 0.963
C5167_005056
Uncharacterized protein.
   
 
 0.952
C5167_048687
Uncharacterized protein.
   
 
 0.952
C5167_022995
Brix domain-containing protein.
   
 
 0.948
C5167_006418
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
   
 
 0.944
C5167_034139
OBG-type G domain-containing protein.
   
 
 0.944
C5167_014870
WD_REPEATS_REGION domain-containing protein.
   
 
 0.929
C5167_002321
DUF4217 domain-containing protein.
   
 0.918
C5167_003518
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.918
C5167_033421
Uncharacterized protein.
   
  0.914
Your Current Organism:
Papaver somniferum
NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy
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