STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C5167_011093Helicase C-terminal domain-containing protein. (543 aa)    
Predicted Functional Partners:
C5167_032597
Uncharacterized protein.
    
 0.920
C5167_010106
Uncharacterized protein.
   
 0.916
C5167_033421
Uncharacterized protein.
   
 0.911
C5167_020100
WD_REPEATS_REGION domain-containing protein.
   
 0.900
C5167_017294
SFM domain-containing protein.
    
 0.886
C5167_008315
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.868
C5167_046745
Uncharacterized protein.
   
 0.855
C5167_033736
WD_REPEATS_REGION domain-containing protein.
   
 0.852
C5167_038924
Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.
    
 0.843
C5167_038706
CBF domain-containing protein.
   
 0.839
Your Current Organism:
Papaver somniferum
NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.