STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C5167_034502PH domain-containing protein. (849 aa)    
Predicted Functional Partners:
C5167_033554
C3H1-type domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
      
 0.714
C5167_017101
Usp domain-containing protein.
      
 0.709
C5167_004386
Uncharacterized protein.
      
 0.620
C5167_039282
SAM_MT_TRM5_TYW2 domain-containing protein.
      
 0.616
C5167_009347
SAM_MT_TRM5_TYW2 domain-containing protein.
      
 0.616
C5167_032763
Uncharacterized protein.
      
 0.515
C5167_049315
Uncharacterized protein.
      
 0.515
C5167_050349
Uncharacterized protein.
      
 0.515
C5167_036656
Uncharacterized protein; Belongs to the chaperonin (HSP60) family.
      
 0.508
C5167_011462
Uncharacterized protein; Belongs to the chaperonin (HSP60) family.
      
 0.508
Your Current Organism:
Papaver somniferum
NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy
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