STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C5167_035651Uncharacterized protein. (873 aa)    
Predicted Functional Partners:
C5167_015547
Uncharacterized protein.
  
     0.480
C5167_034398
Uncharacterized protein.
  
     0.480
C5167_015548
Uncharacterized protein.
  
     0.471
C5167_024020
Uncharacterized protein.
  
     0.470
C5167_037491
LRRNT_2 domain-containing protein.
  
     0.465
C5167_040601
Uncharacterized protein; Belongs to the disease resistance NB-LRR family.
  
     0.449
C5167_020069
Uncharacterized protein.
  
     0.442
C5167_031727
Uncharacterized protein; Belongs to the disease resistance NB-LRR family.
  
     0.438
C5167_048954
Uncharacterized protein.
  
     0.433
C5167_038924
Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.
    
 0.414
Your Current Organism:
Papaver somniferum
NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy
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