STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C5167_048911Ribulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site. (182 aa)    
Predicted Functional Partners:
C5167_032704
Phosphoribulokinase.
   
 0.922
C5167_049487
Phosphoribulokinase.
   
 0.922
C5167_019273
Uncharacterized protein.
   
 
 0.907
C5167_018823
Uncharacterized protein.
     
  0.900
C5167_019582
Uncharacterized protein.
     
  0.900
C5167_036655
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
     
 0.672
C5167_040115
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
     
 0.672
C5167_041198
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
     
 0.672
C5167_050682
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
     
 0.672
C5167_002229
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
     
 0.672
Your Current Organism:
Papaver somniferum
NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy
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