STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C5167_049944Uncharacterized protein. (199 aa)    
Predicted Functional Partners:
C5167_017296
Uncharacterized protein.
   
 
 0.805
C5167_032186
Uncharacterized protein.
   
 
 0.802
C5167_042906
Uncharacterized protein.
   
 
 0.779
C5167_037717
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.778
C5167_010283
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.778
C5167_044045
Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.
   
 
 0.776
C5167_012786
Uncharacterized protein.
    
 0.772
C5167_023648
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. BET3 subfamily.
    
 0.772
C5167_038280
Uncharacterized protein.
    
 0.769
C5167_008671
Uncharacterized protein.
    
 0.769
Your Current Organism:
Papaver somniferum
NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy
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