STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C5167_050100Uncharacterized protein. (265 aa)    
Predicted Functional Partners:
C5167_038548
SpoU_methylase domain-containing protein.
   
 
 0.962
C5167_003204
G domain-containing protein.
  
 
 0.961
C5167_046235
G domain-containing protein.
  
 
 0.961
C5167_031432
Nicotinamide-nucleotide adenylyltransferase.
  
  
 0.959
C5167_000610
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
   
 
 0.953
C5167_046522
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
   
 
 0.953
C5167_019143
KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.
   
 
 0.952
C5167_009942
Hflx-type G domain-containing protein.
   
 
 0.934
C5167_038173
Ribosomal_TL5_C domain-containing protein.
   
 
 0.929
C5167_010860
Ribosomal_TL5_C domain-containing protein.
   
 
 0.929
Your Current Organism:
Papaver somniferum
NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy
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