STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C5167_050585WGR domain-containing protein. (137 aa)    
Predicted Functional Partners:
C5167_025092
Ku domain-containing protein.
    
 
 0.716
C5167_040917
Uncharacterized protein.
    
 0.713
C5167_040916
Uncharacterized protein.
    
 0.713
C5167_008771
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.604
C5167_005061
ATP-dependent DNA helicase 2 subunit KU80; Single-stranded DNA-dependent ATP-dependent helicase.
   
 
 0.598
C5167_048703
ATP-dependent DNA helicase 2 subunit KU80; Single-stranded DNA-dependent ATP-dependent helicase.
   
 
 0.598
C5167_012820
PPR_long domain-containing protein.
   
  0.564
C5167_006491
Ubiquitin-like domain-containing protein.
    
  0.553
C5167_005561
Uncharacterized protein.
    
  0.523
C5167_022999
Uncharacterized protein.
    
  0.523
Your Current Organism:
Papaver somniferum
NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy
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