C5167_043586 protein (Papaver somniferum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C5167_043586

RBR-type E3 ubiquitin transferase. (662 aa)

Predicted Functional Partners:

C5167_021075

0.513

C5167_013120

0.513

C5167_021999

0.513

C5167_024329

0.513

C5167_014249

0.480

C5167_037446

0.464

C5167_039965

0.463

C5167_041315

0.463

C5167_046922

0.461

C5167_039605

0.446

Your Current Organism:

Papaver somniferum

NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5167_013120	C5167_043586	A0A4Y7J0B9	A0A4Y7LA05	Tr-type G domain-containing protein.	RBR-type E3 ubiquitin transferase.	0.513
C5167_014249	C5167_037446	A0A4Y7J5Q5	A0A4Y7IAQ0	E2_bind domain-containing protein.	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	0.902
C5167_014249	C5167_039605	A0A4Y7J5Q5	A0A4Y7IG42	E2_bind domain-containing protein.	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	0.858
C5167_014249	C5167_043586	A0A4Y7J5Q5	A0A4Y7LA05	E2_bind domain-containing protein.	RBR-type E3 ubiquitin transferase.	0.480
C5167_021075	C5167_021999	A0A4Y7IXX5	A0A4Y7JHL3	Tr-type G domain-containing protein.	eRF1_3 domain-containing protein.	0.910
C5167_021075	C5167_024329	A0A4Y7IXX5	A0A4Y7JRX0	Tr-type G domain-containing protein.	Tr-type G domain-containing protein.	0.902
C5167_021075	C5167_043586	A0A4Y7IXX5	A0A4Y7LA05	Tr-type G domain-containing protein.	RBR-type E3 ubiquitin transferase.	0.513
C5167_021999	C5167_021075	A0A4Y7JHL3	A0A4Y7IXX5	eRF1_3 domain-containing protein.	Tr-type G domain-containing protein.	0.910
C5167_021999	C5167_024329	A0A4Y7JHL3	A0A4Y7JRX0	eRF1_3 domain-containing protein.	Tr-type G domain-containing protein.	0.906
C5167_021999	C5167_043586	A0A4Y7JHL3	A0A4Y7LA05	eRF1_3 domain-containing protein.	RBR-type E3 ubiquitin transferase.	0.513
C5167_024329	C5167_021075	A0A4Y7JRX0	A0A4Y7IXX5	Tr-type G domain-containing protein.	Tr-type G domain-containing protein.	0.902
C5167_024329	C5167_021999	A0A4Y7JRX0	A0A4Y7JHL3	Tr-type G domain-containing protein.	eRF1_3 domain-containing protein.	0.906
C5167_024329	C5167_043586	A0A4Y7JRX0	A0A4Y7LA05	Tr-type G domain-containing protein.	RBR-type E3 ubiquitin transferase.	0.513
C5167_037446	C5167_014249	A0A4Y7IAQ0	A0A4Y7J5Q5	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	E2_bind domain-containing protein.	0.902
C5167_037446	C5167_039605	A0A4Y7IAQ0	A0A4Y7IG42	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	0.857
C5167_037446	C5167_043586	A0A4Y7IAQ0	A0A4Y7LA05	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	RBR-type E3 ubiquitin transferase.	0.464
C5167_039605	C5167_014249	A0A4Y7IG42	A0A4Y7J5Q5	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	E2_bind domain-containing protein.	0.858
C5167_039605	C5167_037446	A0A4Y7IG42	A0A4Y7IAQ0	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	0.857
C5167_039605	C5167_043586	A0A4Y7IG42	A0A4Y7LA05	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	RBR-type E3 ubiquitin transferase.	0.446
C5167_039965	C5167_043586	A0A4Y7IDM7	A0A4Y7LA05	tRNA-dihydrouridine synthase; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs; Belongs to the dus family.	RBR-type E3 ubiquitin transferase.	0.463