C5167_047411 protein (Papaver somniferum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C5167_047411

RRM domain-containing protein. (284 aa)

Predicted Functional Partners:

C5167_014992

0.897

C5167_039263

0.844

C5167_010106

0.839

C5167_008315

0.825

C5167_033421

0.825

C5167_001994

0.825

C5167_004495

0.722

C5167_024704

0.722

C5167_006333

0.715

C5167_048340

0.715

Your Current Organism:

Papaver somniferum

NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5167_001994	C5167_004495	A0A4Y7KZL1	A0A4Y7J7S0	MI domain-containing protein.	G-patch domain-containing protein.	0.936
C5167_001994	C5167_006333	A0A4Y7KZL1	A0A4Y7JE02	MI domain-containing protein.	Uncharacterized protein.	0.969
C5167_001994	C5167_008315	A0A4Y7KZL1	A0A4Y7JXA8	MI domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.989
C5167_001994	C5167_010106	A0A4Y7KZL1	A0A4Y7K0P1	MI domain-containing protein.	Uncharacterized protein.	0.475
C5167_001994	C5167_014992	A0A4Y7KZL1	A0A4Y7J7V6	MI domain-containing protein.	Uncharacterized protein.	0.608
C5167_001994	C5167_024704	A0A4Y7KZL1	A0A4Y7JSP5	MI domain-containing protein.	G-patch domain-containing protein.	0.936
C5167_001994	C5167_033421	A0A4Y7KZL1	A0A4Y7KD71	MI domain-containing protein.	Uncharacterized protein.	0.924
C5167_001994	C5167_039263	A0A4Y7KZL1	A0A4Y7IF45	MI domain-containing protein.	RNA helicase.	0.995
C5167_001994	C5167_047411	A0A4Y7KZL1	A0A4Y7LKG7	MI domain-containing protein.	RRM domain-containing protein.	0.825
C5167_001994	C5167_048340	A0A4Y7KZL1	A0A4Y7KJ38	MI domain-containing protein.	Uncharacterized protein.	0.969
C5167_004495	C5167_001994	A0A4Y7J7S0	A0A4Y7KZL1	G-patch domain-containing protein.	MI domain-containing protein.	0.936
C5167_004495	C5167_006333	A0A4Y7J7S0	A0A4Y7JE02	G-patch domain-containing protein.	Uncharacterized protein.	0.587
C5167_004495	C5167_008315	A0A4Y7J7S0	A0A4Y7JXA8	G-patch domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.827
C5167_004495	C5167_014992	A0A4Y7J7S0	A0A4Y7J7V6	G-patch domain-containing protein.	Uncharacterized protein.	0.968
C5167_004495	C5167_033421	A0A4Y7J7S0	A0A4Y7KD71	G-patch domain-containing protein.	Uncharacterized protein.	0.642
C5167_004495	C5167_039263	A0A4Y7J7S0	A0A4Y7IF45	G-patch domain-containing protein.	RNA helicase.	0.643
C5167_004495	C5167_047411	A0A4Y7J7S0	A0A4Y7LKG7	G-patch domain-containing protein.	RRM domain-containing protein.	0.722
C5167_004495	C5167_048340	A0A4Y7J7S0	A0A4Y7KJ38	G-patch domain-containing protein.	Uncharacterized protein.	0.587
C5167_006333	C5167_001994	A0A4Y7JE02	A0A4Y7KZL1	Uncharacterized protein.	MI domain-containing protein.	0.969
C5167_006333	C5167_004495	A0A4Y7JE02	A0A4Y7J7S0	Uncharacterized protein.	G-patch domain-containing protein.	0.587