Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALC56_15348CCHC-type domain-containing protein. (301 aa)    
Predicted Functional Partners:
ALC56_15126
Superkiller viralicidic activity 2-like 2.
   
 0.765
ALC56_14460
PAP-associated domain-containing protein 5.
   
 0.695
ALC56_07056
Helicase SKI2W.
   
 0.528
ALC56_13386
Importin-7.
   
 0.491
ALC56_10719
Exosome component 10.
   
 0.426
ALC56_06074
3'-5' exoribonuclease CSL4 like protein.
   
 
 0.415
ALC56_04535
Exosome complex exonuclease RRP45.
   
 
 0.412
ALC56_02920
Nuclear nucleic acid-binding protein C1D.
   
 0.408
ALC56_02273
Exosome complex exonuclease RRP42.
   
 
 0.403
Your Current Organism:
Trachymyrmex septentrionalis
NCBI taxonomy Id: 34720
Other names: T. septentrionalis
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